Publications

Biomedicine

  • Tobias Kuhn, Egon Willighagen, Chris Evelo, Núria Queralt-Rosinach, Emilio Centeno, Laura I. Furlong, “Reliable Granular References to Changing Linked Data”, ISWC2017, (Accepted), 2017. [preprint]
  • Robert Hoehndorf and Núria Queralt-Rosinach, “Data Science and Symbolic AI: Synergies, challenges and opportunities”, Data Science, (Accepted), 2017. [DataScience][DOI]
  • Mona Alshahrani, Mohammed Asif Khan, Omar Maddouri, Akira R Kinjo, Núria Queralt-Rosinach, Robert Hoehndorf, “Neuro-symbolic representation learning on biological knowledge graphs”, (Accepted), 2017. [arXiv][Bioinformatics][DOI]
  • Andra Waagmeester, Egon Willighagen, Núria Queralt-Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M Schriml, Paul Pavlidis, Andrew I Su, Benjamin M Good, “Linking Wikidata to the rest of the Semantic Web”, SWAT4LS 2016 proceedings, 2016. [pdf]
  • Janet Piñero,Àlex Bravo, Núria Queralt-Rosinach, Alba Gutiérrez-Sacristán, Jordi Deu-Pons, Emilio Centeno, Javier García-García, Ferran Sanz, Laura I Furlong, “DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants”, NAR, (Accepted), 2016. [NAR]
  • Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier, “Decentralized Provenance-Aware Publishing with Nanopublications”, PeerJ, (Accepted), 2016. [PeerJ]
  • D. Digles, B. Zdrazil, J.-M. Neefs, H. Van Vlijmen, C. Herhaus, A. Caracoti, J. Brea, B. Roibás, M. Loza, N. Queralt-Rosinach, L. I. Furlong, A. Gaulton, L. Bartek, S. Senger, C. Chichester, O. Engkvist, C. Evelo, G. F. Ecker and E. Jacoby, “Open PHACTS Computational Protocols for in silico Target Validation of Cellular Phenotypic Screens: Knowing the Knowns”, (Accepted), 2016.
  • Jose Luis Oliveira, Pedro Sernadela, Lorena González-Castro, Claudio Carta, Eelke van der Horst, Pedro Lopes, Rajaram Kaliyaperumal, Rachel Thompson, Núria Queralt-Rosinach, Estrella Lopez, Libby Wood, Claudia Lamanna, Mette Gilling, Michael Orth, Roxana Martinez, Manuel Posada, Domenica Taruscio, Peter Robinson, Marco Roos, and Agata Robertson, “Linked Registries: connecting rare diseases patient registries through a semantic web layer”, (Submitted), 2016.
  • Núria Queralt-Rosinach, Janet Piñero, Àlex Bravo, Ferran Sanz, and Laura I. Furlong, “DisGeNET-RDF: Harnessing the Innovative Power of the Semantic Web  to Explore the Genetic Basis of Diseases”, Bioinformatics, 2016. doi: 10.1093/bioinformatics/btw214. [bioRxiv][HTML][pdf][PubMed]
  • Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura I. Furlong, Michel Dumontier, and Amit Sheth, “On Reasoning with RDF Statements about Statements using Singleton Property Triples”, 2015. [arXiv]
  • Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura I. Furlong, Vinh Nguyen, Amit Sheth, Olivier Bodenreider, and Michel Dumontier, “Exposing Provenance Metadata Using Different RDF Models”, 2015. [arXiv]
  • N. Queralt-Rosinach, T. Kuhn, C. Chichester, M. Dumontier, F. Sanz, and L.I. Furlong, “Publishing DisGeNET as Nanopublications”, (to appear) Semantic Web Journal, 2015. [HTML][pdf][Link]
  • J. Piñero, N. Queralt-Rosinach, À. Bravo, J. Deu-Pons, A. Bauer-Mehren, M. Baron, F. Sanz, and L.I. Furlong, “DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes”, Database (2015), Vol. 2015, article ID bav028, 2015. [HTML][pdf]
  • À. Bravo, J. Piñero, N. Queralt-Rosinach, M. Rautschka, and L.I. Furlong, “Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research”, BMC Bioinformatics, 16, 55, 2015. [HTML][Provisional pdf][bioRxiv]
  • À. Bravo, M. Cases, N. Queralt-Rosinach, F. Sanz, and L.I. Furlong, “A Knowledge-Driven Approach to Extract Disease-Related Biomarkers from the Literature”, BioMed Research International, Vol. 2014, article ID 253128, 2014. [HTML][pdf]
  • M. Dumontier et al., “The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery”, Journal of Biomedical Semantics, 5, 14, 2014. [HTML][pdf]
  • N. Queralt-Rosinach and L.I. Furlong, “DisGeNET RDF: A Gene-Disease Association Linked Open Data Resource”, SWAT4LS 2013, 2013. [pdf][poster]
  • N. Queralt-Rosinach and L.I. Furlong, “DisGeNET: from MySQL to Nanopublication, Modelling Gene-Disease Associations for the Semantic Web”, SWAT4LS 2012, 2012. [pdf][poster]
  • N. Queralt-Rosinach and J. Mestres, “A canonical cation-π interaction stabilizes the agonist conformation of estrogen-like nuclear receptors”, European Biophysics Journal, 39, 1471-1475, 2010. [HTML]

Chemistry

  • I. Negodaev, N. Queralt-Rosinach, R. Caballol, and C. de Graaf, “Theoretical study of the magnetic exchange interaction in catena-μ-Tris[oxalato(2-)-O1,O2;O3,O4]-dicopper complex with interlocked helical chains”, Chemical Physics, 379, 109-115, 2011. [pdf]
  • N. Queralt, D. Taratiel, C. de Graaf, R. Caballol, R. Cimiraglia, and C. Angeli, “On the applicability of multireference second-order perturbation theory to study weak magnetic coupling in molecular complexes”, Journal of Computational Chemistry, 29, 994-1003, 2008. [pdf]
  • N. Queralt, C. de Graaf, J. Cabrero, and R. Caballol, “Ferrimagnetic coupling in oxamido-bridged Mn(II)Cu(II) compounds: a combined CASPT2 and DDCI study”, Molecular Physics, 101, 2095-2102, 2003. [pdf]
PhD Thesis
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